Software for second-generation sequencing data analysis
This software is under heavy development. Please email with any comments or questions.Srfim
Short-Read Filtering and Intensity-Modeling. This package does model-based quality assessment and base-calling for Illumina GA data.[download] [usage]
Rsolid
Preprocessing for color-calling of ABI SOLiD data.[download and usage]
SERVIC4E
Effective detection of rare variants in pooled DNA samples. This is joint work with Tejasvi Niranjan at the Johns Hopkins Institute of Genomic Medicine.[download]