R Lab 6

Download the source code for the lab: rlab6-epigenetics.R

This .R file can be used to go through some simple analyses epigenetic data for Illumina and CHARM platforms.
The data for the lab can be accessed here:
CHARM_data_for_genomics_class.rda
forJeffDataGenomics.rda (Illumina Data)
These are big files, make sure you right click and "Save As"

If you haven't installed SVA you can download and install the latest versions from here: sva_2.1.0.tar.gz (Mac/Unix Version)
sva_2.1.0.zip (Windows Version)
To install SVA, download the appropriate file, start R and change your working directory to the directory with the file, then use the command:

install.packages("sva_2.1.0.tar.gz")

Replace "sva_2.1.0.tar.gz" with "sva_2.0.0.zip" if you are on a windows computer. Return to the course webpage .