BASIC PROTOCOL 1: CHIP-CHIP PEAK CALLING FOR AFFYMETRIX TILING ARRAY DATA

             Gli3 Affymetrix ChIP-chip Data

             (Before using it, first unzip the file using WinZip or WinRAR)

 

BASIC PROTOCOL 5: DE NOVO MOTIF DISCOVERY

             Sample DNA Sequence File: Peak_ExonArray.fa

 

BASIC PROTOCOL 6: MOTIF MAPPING

             Gli Motif Matrix: Glimotif.mat

             Gli Motif Consensus: Glimotif.cons

 

BASIC PROTOCOL 7: CHIP-CHIP PEAK CALLING FOR OTHER TILING ARRAY PLATFORMS

             Gli1 Agilent ChIP-chip Data

 

BASIC PROTOCOL 8: CHIP-SEQ PEAK CALLING (ONE-SAMPLE ANALYSIS)

             NRSF ChIP-seq (IP): NRSF_ip_hg17.aln

             (Before using it, first unzip the file using WinZip or WinRAR)

 

BASIC PROTOCOL 9: CHIP-SEQ PEAK CALLING (TWO-SAMPLE ANALYSIS)

             NRSF ChIP-seq (IP): NRSF_ip_hg17.aln

             NRSF ChIP-seq (Control): NRSF_mock_hg17.aln

             (Before using it, first unzip the file using WinZip or WinRAR)

Sample Data Sets for Basic Protocols in Bioinformatics