Ciprian Crainiceanu's Software

Software by type:

Bayesian/WinBUGS/MCMC   Multilevel Functional   Functional regression   Penalized splines   Image replication studies   Matrix decompositions   Interactive 3D and 4D brain imaging

• Bayesian/WinBUGS/MCMC
  • Bayesian Analysis for Penalized Spline Regression using WinBUGS, JSS, 14(14), 2005 technical report, software
  • Bayesian Functional Data Analysis using WinBUGS JSS, 32(11), 2009 technical report, software
• Functional data
  • Longitudinal Functional Principal Component Analysis paper LFPCA.r
  • Multilevel Functional Principal Component Analysis paper MFPCA.r
  • Multilevel Sparse Functional Principal Component Analysis paper MFPCA_sparse.r
• Functional regression
  • Penalized functional regression, JCGS, pfr function in the refund package
  • Longitudinal penalized functional regression paper, lpfr function in the refund package
• Penalized splines
  • Exact for R/LRT of zero variance in LMMs, R/LRT null distribution MATLAB programs
  • Exact for R/LRT of zero variance in LMMs, RLRsim (written by Fabian Scheipl) RLRsim R package
  • Fast Adaptive Penalised Splines, JCGS 17(1), 1-20 technical report, R package
• Image replication studies
  • I2C2 software for image replication, MATLAB and R code with Kirby21 ventricle replication example
  • The image intra-class correlation coefficient (I2C2) for replication studies paper is now posted
• Matrix decompositions
  • rTensor R package (maintainted by James Li) and containing an implementation of Population Value Decomposition (PVD)
• Interactive 3D and 4D brain imaging
  • PhD student John Muschelli builds first interactive R plots for 3D and 4D brain imaging
  • R package brainR

  
  
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